The 5.8S nuclear ribosomal RNA gene
sequence alignment
may be viewed in its entirety in Nexus format (below),
or
may be downloaded as a PAUP format file: "
5.8Ssequences
".
Address questions regarding conditions of use to dvogler@california.com
[FILE NAME: "5.8Ssequences"; CITED IN Cullings and Vogler, (1998), A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution, Molecular Ecology (in press).] [USE SUBJECT TO PERMISSION OF THE AUTHORS.]
#NEXUS
[Description of Taxa: Cronar.coleo Cronartium coleosporioides (SPC-21) L76513 Basidiomycota/Urediniomycetes/Uredinales/Cronartiaceae Melamp.epitea Melampsora epitea S.B.Clark Basidiomycota/Urediniomycetes/Uredinales/Melampsoraceae Melamp.lini Melampsora lini S.B.Clark Basidiomycota/Urediniomycetes/Uredinales/Melampsoraceae Pucciniastrum Pucciniastrum goeppertianum (PgW-1) L76508 Basidiomycota/Urediniomycetes/Uredinales/Pucciniastraceae Chrysomyxa Chrysomyxa arctostaphyli (CharPe-1) L76488 Basidiomycota/Urediniomycetes/Uredinales/Chrysomyxaceae Pucc.striiform Puccinia striiformis L08735 Basidiomycota/Urediniomycetes/Uredinales/Pucciniaceae Pucc.sorghi Puccinia sorghi L08734 Basidiomycota/Urediniomycetes/Uredinales/Pucciniaceae Uromyces Uromyces scillarum L08733 Basidiomycota/Urediniomycetes/Uredinales/Pucciniaceae Septobasidium Septobasidium carestianum (SeCa-1) D.R.Vogler Basidiomycota/Septobasidiales/Septobasidiaceae Rhizopogon Rhizopogon subcaerulescens M91613 Basidiomycota/Hymenomycetes/Agaricales/Boletaceae Suil.sinuspaul Suillus sinuspaulianus L54078 Basidiomycota/Hymenomycetes/Agaricales/Boletaceae Suil.cavipes Suillus cavipes L54119 Basidiomycota/Hymenomycetes/Agaricales/Boletaceae C.vinicolor Chroogomphus vinicolor L54095 Basidiomycota/Hymenomycetes/Agaricales/Gomphidiaceae G.glutinosus Gomphidius glutinosus L54114 Basidiomycota/Hymenomycetes/Agaricales/Gomphidiaceae T.citrina Truncocolumella citrina L54097 Basidiomycota/Hymenomycetes/Agaricales/Rhizopogonaceae Tricho.matsu Tricholoma matsutake U62964 Basidiomycota/Hymenomycetes/Agaricales/Tricholomataceae Amanita.musc Amanita muscaria Z54294 Basidiomycota/Hymenomycetes/Agaricales/Amanitaceae Unk.basidio Unknown basidiomycete on bamboo U65662 Basidiomycota/unknown affiliation Megacollybia Megacollybia platyphylla (?) J.Worrall Basidiomycota Agaric.bispor Agaricus bisporus A.Brooks Basidiomycota Cryptococ.neof Cryptococcus neoformans L14067 Basidiomycota/Filobasidiales Johns.lab.rat Unknown basidiomycete J.Dempcy Basidiomycete (?) amplified from a Phacelia sp. Ascosphaera.ap Ascosphaera apis U18362 Ascomycota/Plectomycetes/Ascosphaerales/Ascosphaeraceae B.bassiana Beauveria bassiana Z47354 Ascomycota/mitosporic Ascomycotina Hypoc.schwei Hypocrea schweinitzii X93957 Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae Claviceps.pur Claviceps purpurea U57669 Ascomycota/Pyrenomycetes/Hypocreales/Clavicipitaceae Cerato.dougl Ceratocystis douglasii U75626 Ascomycota/Pyrenomycetes/Microascales/Microascaceae Chalara.aust Chalara australis U75629 Ascomycota/mitosporic Ascomycota Ophios.ulmi Ophiostoma ulmi U23424 Ascomycota/Pyrenomycetes/Ophiostomatales/Ophiostomataceae F.subglutinans Fusarium subglutinans X93907 Ascomycota/Pyrenomycetes/Hypocreales/mitosporic Hypocreaceae Gaeuman.cylin Gaeumannomyces cylindrosporus U17211 Ascomycota/Pyrenomycetes/Diaporthales/Valsaceae L.maculans Leptosphaeria maculans M96663 Ascomycota/Loculoascomycetes/Loculoedaphomycetidae/Pleosporales/Phaeosphaeriaceae Penicill.marne Penicillium marneffei L37406 Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae Eupenicill.jav Eupenicillium javanicum U18358 Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae Phial.gramin Phialophora graminicola U17218 Ascomycota/Chaetothyriales/mitosporic Chaetothyriales Phoma.wasabiae Phoma wasabiae L38711 Deuteromycota/Coelomycetes/Sphaeropsidales/Phomaceae Scler.sclerot Sclerotinia sclerotiorum M96382 Ascomycota/Discomycetes/Helotiales/Sclerotiniaceae Morchella.con Morchella conica U51852 Ascomycota/Discomycetes/Pezizales/Morchellaceae Morchella.esc Morchella esculenta U51851 Ascomycota/Discomycetes/Pezizales/Morchellaceae Rutstroe.firm Rutstroemia firma Z80893 Ascomycota/Discomycetes/Leotiales/Sclerotiniaceae Gremmen.abiet Gremmeniella abietina U72259 Ascomycota/Discomycetes/Leotiales/Leotiaceae Uncinula.adun Uncinula adunca D84383 Ascomycota/Erysiphales/Erysiphaceae Sphaero.cucur Sphaerotheca cucurbitae D84377 Ascomycota/Erysiphales/Erysiphaceae Phyllac.moric Phyllactinia moricola D84384 Ascomycota/Erysiphales/Erysiphaceae Pleoch.shirai Pleochaeta shiraiana D84380 Ascomycota/Erysiphales/Erysiphaceae Drechsler.aven Drechlera avenae X78123 Ascomycota/Loculoascomycetes/Dothideales/Pleosporaceae/mitosporic Pleosporaceae Bipolaris.oryz Bipolaris oryzae X78122 Ascomycota/Loculoascomycetes/Dothideales//Pleosporaceae/mitosporic Pleosporaceae Nect.vilior Nectria vilior U57673 Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae Neocos.vasin Neocosma vasinfecta L36627 Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae Colleto.acuta Colletotrichum acutatum X73810 Ascomycota/Pyrenomycetes/Phyllacorales/Phyllachoraceae Glomerel.cing Glomerella cingulata X73811 Ascomycota/Pyrenomycetes/Phyllachorales/Phyllachoraceae Tricho.reesei Trichoderma reesei X77579 Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae Acrem.strictum Acremonium strictum U57671 Ascomycota/Pyrenomycetes/mitosporic Pyrenomycetes Acrem.chrysog Acremonium chrysogenum U57672 Ascomycota/Pyrenomycetes/mitosporic Pyrenomycetes Alter.altern Alternaria alternata X17454 Ascomycota/Loculoascomycetes/mitosporic Loculoascomycetes Neurospora Neurospora crassa M10692 Ascomycota/Pyrenomycetes/Sordariales/Sordariaceae. Monascus.purp Monoascus purpureus U18356 Ascomycota/Plectomycetes/Eurotiales/Monoascaceae Asperg.ustus Aspergillus ustus L76744 Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae/mitosporic Trichocomaceae Asperg.niger Aspergillus niger L76748 Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae/mitosporic Trichocomaceae Candida.stell Candida stellatoidea L47114 Ascomycota/Hemiascomycetes/Saccharomycetales/Saccharomycetaceae/mitosporic Saccharomycetaceae Candida.albic Candida albicans L07796 Ascomycota/Hemiascomycetes/Saccharomycetales/Candidaceae Saccharomyces Saccharomyces cerevisiae K04018 Ascomycota/Hemiascomycetes/Endomycetales/Saccharomycetaceae Holleya.sinec Holleya sinecauda U51435 Ascomycota/Hemiascomycetes/Saccharomycetales/Saccharomycetaceae Kluyv.aestuar Kluyveromyces aestuarii U09324 Ascomycota/Hemiascomycetes/Saccharomycetales/Saccharomycetaceae Eremo.ashbyi Eremothecium ashbyi U09323 Ascomycota/Hemiascomycetes/Saccharomycetales/Eremotheciaceae Ashbya.gossy Ashbya gossypii U09322 Ascomycota/Hemiascomycetes/Saccharomycetales/Eremotheciaceae Nemato.coryl Nematospora coryli U09326 Ascomycota/Hemiascomycetes/Saccharomycetales/Eremotheciaceae Thermo.lanug Thermomyces lanuginosis M10392 Deuteromycota YelBurnBS1-12 Yellowstone NP 8y burn mycorr. tip W.Stoll Ascomycete? Glomus.dimorph Glomus dimorphicum X96841 Zygomycota/Zygomycetes/Glomales/Glomaceae Glomus.moessae Glomus moessae U49264 Zygomycota/Zygomycetes/Glomales/Glomaceae Glomus.coronat Glomus coronata X96846 Zygomycota/Zygomycetes/Glomales/Glomaceae Brassica.napus Brassica napus D10840 Magnoliophyta/Magnoliopsida/Dilleniidae/Capparales/Brassicaseae Phaseolus.vulg Phaseolus vulgaris Z48779 Magnoliophyta/Magnoliopsida/Rutanae/Sapindales/Fabaceae/Faboideae Rhodo.occid Rhododendron occidentali X97431 Magnoliophyta/Magnoliopsida/Dilleniidae/Ericales/Ericaceae Daboecia.cant Daboecia cantabrica X97430 Magnoliophyta/Magnoliopsida/Theanae/Ericales/Ericaceae Arcto.uva-ursi Arctostaphylos uva-ursi S.Markos Ericaceae Taxus.baccata Taxus baccata X93991 Pinophyta/Coniferales/Taxaceae Isoetes Isoetes histrix X91871 Thallobionta/Lycopodiophyta/Isoetopsida/Isoetales/Isoetaceae Selaginella Selaginella denticulata X91873 Embryobionta/Pteridophyta/Lycopodiatae/Selaginellales Marsilea.quad Marsilea quadrifolia X15139 Embryophyta/Filicophyta/Filicopsida/Marsileales/Marsileaceae Osmunda.regal Osmunda regalis X63199 Embryophyta/Filicophyta/Filicopsida/Filicales/Osmundaceae Pinus.conto Pinus contorta U23956 Pinophyta/Coniferales/Pinaceae Picea.mexicana Picea mexicana U24251 Pinophyta/Coniferopsida/Coniferales/Pinaceae Gossypium.hirs Gossypium hirsutum U12719 Magnoliophyta/Magnoliopsida/Dilleniidae/Malvales/Malvaceae Oryza.sativa Oryza sativa M16845 Magnoliophyta/Liliopsida/Commelinidae/Cyperales/Poaceae Polem.pulch Polemonium pulcherrimum I.deGeofroy Polemoniaceae Polem.brand Polemonium brandegei I.deGeofroy Polemoniaceae Lupinus.lut Lupinus luteus X16805 Magnoliophyta/Magnoliopsida/Rosidae/Fabales/Fabaceae Vicia.faba Vicia faba M10471 Magnoliophyta/Magnoliopsida/Rosidae/Fabales/Fabaceae Phacelia.hydro Phacelia hydrophylloides J.Dempcy Hydrophyllaceae Phacelia.proc Phacelia procera J.Dempcy Hydrophyllaceae Triticum.aest Triticum aestivum M10758 Magnoliophyta/Liliopsida/Commelinidae/Cyperales/Poaceae Avena.longigl Avena longiglumis Z11758 Magnoliophyta/Liliopsida/Commelinidae/Poales/Poaceae Bromus.inermis Bromus inermis L11579 Magnoliophyta/Liliopsida/Commelinidae/Cyperales/Poaceae Eucorethra.und Eucorethra underwoodi U07981 Arthropoda/Tracheata/Insecta/Pterygota/Diptera/Chaboridae/Eucorethra Bombyx.mori Bombyx mori X01525 Arthropoda/Tracheata/Insecta/Pterygota/Neoptera/Holometabola/Lepidoptera/Ditrysia/Bombycoidea/Bombycidae Ixodes.dammin Ixodes dammini L22272 Arthropoda/Chelicerata/Arachnida/Acari/Parasitiformes/Ixodida/Ixodoidea/Ixodidae Dolichosaccus Dolichosaccus symmetrus L01631 Animalia/Eumetazoa/Platyhelminthes/Trematoda/Digenea/Plagiorchiidae Homo.sapiens Homo sapiens J01866 Metazoa/Chordata/Vertebrata/Eutheria/Primates/Catarrhini/Hominidae Rattus.norveg Rattus norvegicus V01270 Chordata/Vertebrata/Eutheria/Rodentia/Sciurognathi/Myomorpha/Muridae/Murinae Xenopus.laev. Xenopus laevus K01369 Chordata/Vertebrata/Amphibia/Lissamphibia/Anura/Archeobatrachia/Pipoidea/Pipidae/Xenopodinae Salmo.gaird Salmo gairdneri (brown trout) J01860 Chordata/Vertebrata/Osteichthyes/Actinopterygii/Salmoniformes/Salmonoidei/Salmonidae Anopheles.alb Anopheles albimanus L78065 Arthropoda/Tracheata/Insecta/Pterygota/Diptera/Nematocera/Culicoidea/Culicidae Anopheles.gam Anopheles gambiae X67157 Arthropoda/Tracheata/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Nematocera/Culicidae Culex.tritaen. Culex tritaeniorhynchus U33042 Arthropoda/Tracheata/Insecta/Pterygota/Diptera/Nematocera/Culicoidea/Culicidae D.melanogaster Drosophila melanogaster J01121 Arthropoda/Uniramia/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Brachycera/Cyclorrhapha/Schizophora/Drosophiloidea/Drosophilidae D.yakuba Drosophila yakuba Z28416 Arthropoda/Tracheata/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Brachycera/Cyclorrhapha/Drosophilidae Aedes.aegypti Aedes aegypti M95126 Arthropoda/Uniramia/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Nematocera/Culicoidea/Culicidae Saccostrea.com Saccostrea commercialis L28702 Mollusca/Bivalvia/Pteriomorphia/Eupteriomorphia/Ostreoida/Ostreina/Ostreacea/Ostreidae Arion.rufus Arion rufus X00131 Bilateria/Coelomata/Protostomia/Mollusca/Gastropoda/Pulmonata/Stylommatophora/Arionidae/Arioninae] begin data; dimensions ntax=111 nchar=172; format gap=- missing=? equate= "N=- R=- W=- M=- ?=-" datatype=dna; matrix Cronar.coleo TAACTTTTAACAATGGATC-TCTTGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCAAATCTTTGAACGCACCTTGCA-CC----TT--TTGG-TATTCC-AAAAGGTACACCTGTTTGAGTGTCATGA Melamp.epitea TAACTTTCAGCAATGGATC-TCTAGGCTCTCACGTCGATGAAGAACACAGT--GAAATGT-GATACGTAATGTGAATTGCATAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TT--TTGGTTATTCC-GAAAGGTACGCCTGTTTGAATGTCACAA Melamp.lini TAACTTTCAGCAATGGATC-TCTAGGCTCTCACGTCGATGAAGAACACAGT--GAAATGT-GATACGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TT--TTGGTTATTCC-GAGAGGTACACCTGTTTGAATGTCACGA Pucciniastrum TAACTTTTAACAATGGATC-TCTTGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TT--TTGG-TACTCC-AAAAGGTACACCTGTTTGAGTGTCATGA Chrysomyxa TAACTTTTAACAATGGATC-TCTTGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCAAATCTTTGAACGCACCTTGCA-CC----TT--TTGGATATTCC-GAAAG-TACACCTGTTTGAGTGTCATGA Pucc.striiform TAACTTTTAACAATGGATC-TCTAGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CC----TT--TTGG-TATTCC-AAAAGGCACACCTGTTTGAGTGTCATGA Pucc.sorghi TAACTTTTAACAATGGATC-TCTAGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCATCTTGCG-CC----TT--TTGG-TATTCC-AAAAGGCACACCTGTTTGAGTGTCATGA Uromyces TAACTTTTAACAATGGATC-TCTAGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATTGAATCTTTGAACGCATCTTGCG-CC----TT--TTGG-TATTCC-AAAAGGCACACCTGTTTGAGTGTCATGA Septobasidium AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TC--TTGG-TATTCC-GAGAGGTACATCTGTTTGAGTGTCATGA Rhizopogon CAACTTTCAGCAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAAAGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA Suil.sinuspaul CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATCGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----TC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA Suil.cavipes CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATCGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA C.vinicolor CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACATTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA G.glutinosus CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACATTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA T.citrina CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATCGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGCGTCAGTA Tricho.matsu CAACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TTGG-TATTCC-GAGGAGCATGCCTGTTTGAGTGTCATGA Amanita.musc CAACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGANTCTTNGANCGCACNTTGGC-CT----CC--TTGG-TATTCC-GAGGAGCATGCCTGTTTGAGTGTCATTA Unk.basidio CAACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CT----CC--TTGG-TATTCC-GAGGAGTATGCCTGTTTGAGTGTCATGA Megacollybia CAACTTTCAGCAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CT----CC--TTGGGTATTCC-GAGGAGTATGCCTGTTTGAGTGTCATTA Agaric.bispor CAACTTTCAGCAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCATCTTGCG-CT----CC--TTGG-TATTCC-GAGGAGCATGCCTGTTTGAGTGTCATTA Cryptococ.neof AAACTTTCAACAACGGATC-TCTTGGCTTCCACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCAACTTGCG-CC----CT--TTGG-TATTCC-GAAGGGCATGCCTGTTTGAGAGTCATGA Johns.lab.rat ????????????????????????????????????????????????????????????????????????????TTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACCTTGCG-CC----CT--TTGG-TATTCC-GAAGG-CATGCCTGTTTGAGTGTCAGTA Ascosphaera.ap AAACTTTCAACAACGGATC-TCTTGGTTCCGACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG B.bassiana AAACTTTCAACAACGGATCGTCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATC-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT Hypoc.schwei AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTCCGAGCGTCATTT Claviceps.pur AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGACTT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT Cerato.dougl AAACTTTCAACAACGGATC-TCTTGGCTCTAGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----TG--GCAG-TATTCT-GCCAGGCATGCCTGTCCGAGCGTCATTT Chalara.aust AAACTTTCAACAACGGATC-TCTTGGCTCTAGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----TG--GCAG-TATTCT-GCCAGGCATGCCTGTCCGAGCGTCATTT Ophios.ulmi AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--AAAATGC-GATACGTAATGCGAATTGCAGAATT-CAG-GAGTCATCGAATCTTTGAACGCACATTGGG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTCCGAGCGTCATTT F.subglutinans AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--AAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT Gaeuman.cylin AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCGG-TATTCC-GGCGGGCATGCCTGTTCGAGCGTCATTT L.maculans CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-ATGGGGCATGCCTGTTCGAGCGTCATTT Penicill.marne AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CTGG-CATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTT Eupenicill.jav AAACTTTCAACAACGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG Phial.gramin AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCGG-TATTCC-GGCGGGCATGCCTGTTCGAGCGTCATTT Phoma.wasabiae CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-ATGGGGCATGCCTGTTCGAGCGTCATTT Scler.sclerot AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-GGGGGGCATGCCTGTTCGAGCGTCATTT Morchella.con AAACTTTCAACAACGGATC-TCTTGGTTCCCACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTTCGAGCGTCATAA Morchella.esc AAACTTTCAACAACGGATC-TCTTGGTTCCCACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGAGGGCATGCCTGTTCGAGCGTCATAA Rutstroe.firm AAACTTTCAACAACGGATC-TCTTGGTTCTGG-ATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-CATTCC-GGGGGGCATGCCTGTTCGAGCGTCATTT Gremmen.abiet AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-GGGGGGCATGCCTGTTCGAGCGTCATTT Uncinula.adun AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-CATTCC-GAGGGGCATGCCTGTTCGAGCGTCATAA Sphaero.cucur AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CCGG-CATTCC-GAGGGGCATGCCTGTTCGAGCGTCAGAA Phyllac.moric AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATC-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-GAGGGGSATGCCTGTTCGAGCGTCAAAA Pleoch.shirai AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-CATTCC-GAGGGGCATGCCTGTTCGAGCGTCATAA Drechsler.aven CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AAAGGGCATGCCTGTTCGAGCGTCATTT Bipolaris.oryz CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AAAGGGCATGCCTGTTCGAGCGTCATTT Nect.vilior AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT Neocos.vasin AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTA Colleto.acuta AAACTTTTAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CATTCT-GGCGAGCATGCCTGTTCGAGCGTCATT? Glomerel.cing AAACTTTTAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CATTCCTGGCGGGCATGCCTGTTCGAGCGTCATT? Tricho.reesei AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCGTCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTCCGAGCGTCATT? Acrem.strictum AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCGG-CACTCC-GGCGGGCATGCCTGTCCGAGCGTCATTT Acrem.chrysog AAACTTTCAGCAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CACTCT-GGCGGGCATGCCTGTCCGAGCGTCATTT Alter.altern AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AAAGGGCATGCCTGTTCGAGCGTCATTT Neurospora AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAGGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CT----CG--CCAG-TATTCT-GGCGAGCATGCCTGTTCGAGCGTCATTT Monascus.purp AAACTTTCAACAACGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTA Asperg.ustus AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAACTGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACATTGCG-CC----CC--CTGG-CATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG Asperg.niger AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAACTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG Candida.stell AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATATGAATTGCAGATAT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGAGGGCATGCCTGTTTGAGCGTCGTTT Candida.albic AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGCCGATACGTAATATGAATTGCAGATAT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGAGGGCATGCCTGTTTGAGCGTCGTTT Saccharomyces AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-AGGGGGCATGCCTGTTTGAGCGTCATTT Holleya.sinec AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-AGAGGGCATGCCTGTTTGAGCGTCATTT Kluyv.aestuar AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AGGGGGCATGCCTGTTTGAGCGTCATTT Eremo.ashbyi AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-TC----CT--CTGG-TATTCC-AGAGGGCATGCCTGTTTGAGCGTCATTT Ashbya.gossy AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-TC----CT--CTGG-TATTCC-AGGGGGCATGCCTGTTTGAGCGTCATTT Nemato.coryl AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCATATTGCG-CC----CA--CTGG-TATTCC-GGTGGGCATGCCTGTTTGAGCGTCATTT Thermo.lanug AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATT? YelBurnBS1-12 AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----TC--CTGG-TATTCC-GGGAGGCATGCCTGTTCGAGCGTCATTA Glomus.dimorph TCACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCATAATT-TTGTGAATCATCGAATCTTTGAACGCAAATTGCA-CT----CC--CTGG-TATTCC-GGGGAGTATGCCTGTTTGAGGGTCGTTA Glomus.moessae TCACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCATAATT-TTGTGAATCATCGAATCTTTGAACGCAAATTGCA-CT----CC--CTGG-TATTCC-GGGGAGTATGCCTGTTTGAGGGTCGTTA Glomus.coronat TCACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCATAATT-TTGTGAATCATCGAATCTTTGAACGCAAATTGCA-CT----CT--CTGG-TATTCC-GGGGAGTATGCCTGTTTGAGGGTCGTTA Brassica.napus CGACTCTCGGCAACGGATA-TCTCGGCTCTCACATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGG-----CC--GAGGGCACGTCTGCCTGGGTGTCACAA Phaseolus.vulg TGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAAGCCATTAGG-----CC--GAGGGCAAGCCTGCCTGGGTGTCACAC Rhodo.occid CGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGG-----TT--GAAGGCACGTCTGCCTGGGCGTCACGC Daboecia.cant CGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGG-----TT--GAAGGCACGTCTGCCTGGGCGTCACGC Arcto.uva-ursi CGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGCAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGG-----TT--GAAGGCACGTCTGCCTGGGCGTCACGC Taxus.baccata CGACTCTCGGCAACGGATA-TCTCGGCTCTCGC-ACGATGAAGAACGTAGC--GAAATGC-GATACTTAGTGTGAATTGCAGAATC-CCGTGAATCATCGAGTCTTTGAACGCAAGTTG-GCCCGGAGCT---CGG-----CC--GAGGGCACGTCTGCTTGGGCGTCGCAC Isoetes TACGACTCGGCAACGGATA-TCTTGGCTCTTGCCACGATGAAGAACGCAGC--GAAATGC-GATACGTGATGTGAATTGCAGAACT-CCGTGAATCATTGAATCTTTGAACGCAACTTGCGCCCGGGGCT---TGT-----CC--GAGGGCATGTCTGCGTGAGCGTCTAAC Selaginella AACGACTCGGCAACGGATA-TCTTGGCTCTTGCAACGATGAAGAACGCAGC--GAAATGT-GATACGTGATGTGAATTGCAGAATT-CCGTGAATCATCAAATGTTTGAACGCAACTTGCGCCCGAGGCT---TGT-----CC--GAGGGCATGCCTGCTTGAGCGTCTGCT Marsilea.quad GGACTCTCAGCAACGGATA-TCTTGGCTCTTGCAACGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CCGCGAATCATCGAATCTTTGAACGCAA-TTG-GCCCGAGGCT---CGT-----CC--GAGGGCACGTCTGCCTGAGCGTC-CAC Osmunda.regal CGACTCTCAGCAACGGATA-TCTTGGCTCTTGCAACGATGAAGAACGCAGC--GAAATGC-GATACGTAGTGTGAACTGCAGAATT-CCGCGAATAATCGAGTCTTTGAACGCAAGTTG-GCCCGCGGCT---CGT-----CC--AAGGGCATGCCTGCCTGAGCGTC-CTC Pinus.conto CGACTCTCGTCAACGGATA-TCTCGGCTCTTGTTACGATGAAGAACGTANC--GAAATGC-GATACTTAGTGTGAATTGCAGAATC-CCGTGAATCATCGAGTTTTTGAACGCAATTTGCGCCCGAGGCC--TCGG-----TC--GAGGGCACGTCTGTCTGGGCGTCGCAT Picea.mexicana TGACTCTCGGCMAMGGAWA-TCTCGGCTCTTGTCAACA-GAAGAACGTAGC--GAWATGC-GATACTTAGTGTGAATTGCAGAATC-CCGTGAATCATCGAGTTTTTGWACGCAATTTGCGCCCGAGRCC--TCGG-----TC--GAGGGCACGTCTGTCTGGGCGTCGCAT Gossypium.hirs CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCATTAGG-----CC--GAGGGCACGTCTGCCTGGGTGTCACGC Oryza.sativa CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGG-----CC--GAGGGCACGCCTGCCTGGGCGTCACGC Polem.pulch CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGG-----CC--GAGGGCACGTCTGCCTGGGCGTCTCAC Polem.brand CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGG-----CC--GAGGGCACGTCTGCCTGGGCGTCTCAC Lupinus.lut AGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGG-----CC--GAGGGCACGCCTGCCTGGGTGTTGCAC Vicia.faba TGACTCTCGGCAACGGATA-TCTAGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGC-CCCGATGCCATTAGG-----TT--GAGGGCACGTCTGCCTGGGTGTCACAT Phacelia.hydro CGACTCTCGGCAACGGATA-TCTAGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCGTTAGG-----TC--GAGGGCACGTCTGCCTGGGCGTCACGC Phacelia.proc CGACTCTCGGCAACGGATA-TCTAGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCAAAGCCGTTAGG-----CC--GAGGGCACGTCTGCCTGGGCGTCACGC Triticum.aest CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG-----CC--GAGGGCACGCCTGCCTGGGCGTCACGC Avena.longigl CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATTCGG-----CC--GAGGGCACGCCTGCCTGGGCGTCACGC Bromus.inermis CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG-----TC--GAGGGCACGCCTGCCTGGGCGTCACGC Eucorethra.und TTAACCTTGGCAGGGGATC-ACTTGGCTCATGGATCGATGAAGACCGCAGC--AAAATGC-GCGTCATAATGTGAACTGCAGGACACA--TGAA-CACCGATAAGTTGAACGCATATTGCACCT???????????????????????????????????????????????? Bombyx.mori TTACCCTGGACGGTGGATC-ACTTGGCTCGCGGGTCGATGAAGAACGCAGT--TAACTGC-GCGTCATAGTGTGAACTGCAGGACACATTTGAA-CATCGACATTTCGAACGCACATTGCGGTC???????????????????????????????????????????????? Ixodes.dammin CGACTCTAAGCGGTGGATC-ACTCGGTTCTCGGGTCGATGAAGAACGCAGC--CAGCTGC-GAGACTTGGTGTGAATTGCAGGACACA-CTGAG-CACTTACTCTTTGAACGCACATTGCGGCC???????????????????????????????????????????????? Dolichosaccus CAACTCTGAGCGGTGGATC-ACTCGGCTCGTGTGTCGATGAAGAGCGCAGC--CAACTGT-GTGAATTAATGTGAACTGCATACTGC-TTTGAA-CATCGACATCTTGAACGCACATTGCGGCC???????????????????????????????????????????????? Homo.sapiens CGACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGCGCTAGCTGC-GAGAATTAATGTGAATTGCAGGACACAT-TGA-TCATCGACACTTCGAACGCAC-TTGCGGCC???????????????????????????????????????????????? Rattus.norveg CGACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGC--TAGCTGC-GAGAATTAATGTGAATTGCAGGACACAT-TGA-TCATCGACACTTCGAACGCAC-TTGCGGCC???????????????????????????????????????????????? Xenopus.laev. CGACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGC--TAGCTGC-GAGAATTAGTGTGAATTGCAGGACACAT-TGA-TCATCGACACTTCGAACGCACCTTGCGGCC???????????????????????????????????????????????? Salmo CAACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGCGCTAGCTGC-GAGAACTAATGTGAATTGCAGGACACAT-TGA-TCATTGACACTTCGAACGCACTTTGCGGCC???????????????????????????????????????????????? Anopheles.alb AAACCCTAGGCAGGGGATC-ACTCGGCTCATGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCAGAATGTGAACTGCAGGACACA--TGAA-CACCGACACGTTGAACGA-TATTGCGCAT???????????????????????????????????????????????? Anopheles.gam AAACCCTAGGCAGGGGATC-ACTCGGCTCATGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCATAATGTGAACTGCAGGACACA--TGAA-CATTGATAAGTTGAACGCATATGGCGCAT???????????????????????????????????????????????? Culex.tritaen. AAACCCTAGGCAGGGGATC-ACTCGGCTCGTGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCAGAATGTGAACTGCAGGACACA--TGAA-CACCGACAAGTTGAACGCATATTGCACAT???????????????????????????????????????????????? D.melanogaster AAACTCTATGCGGTGGATC-ACTCGGCTCATGGGTCGATGAAGAACGCAGC--AAACTGT-GCGTCATCGTGTGAACAGCAGGACACA--TGAA-CATCGACATTTTGAACGCATATCGCAGTC???????????????????????????????????????????????? D.yakuba AAACTCTAAGCGGTGGATC-ACTCGGCTCATGGGTCGATGAAGAACGCAGC--AAACTGT-GCGTCATCGTGTGAACTGCAGGACACA--TGAA-CATCGACATTTTGAACGCATATCGCAGTC???????????????????????????????????????????????? Aedes.aegypti AAACCCTAGGCAGGGGATC-ACTCGGCTCGTGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCAGAATGTGAACTGCAGGACACA--TGAA-CACCGACACGTTGAACGCATATTGCACAT???????????????????????????????????????????????? Saccostrea.com CAACTCTAAGTGGTGGATC-ACTCGGCTCGGGGGTCGATGAAGAGCGCAGC--CAGCTGC-GTGAATTAATGTGAATTGCAGGACACAT-TGAAA-G??????????????????????????????????????????????????????????????????????????? Arion.rufus TAACTTTGTGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAGCGCAGC--CAGCTGC-GTGAATTAATGTGAATTGCAGAACACAT-TGAA-CATCGACATCTTGAACGCATATGGCGGCC???????????????????????????????????????????????? ; endblock; begin assumptions; [weight transversions:transitions 2:1] usertype weight stepmatrix=4 ATGC . 2 1 2 2 . 2 1 1 2 . 2 2 1 2 .; endblock;